Plum Island Ecosystems LTER Database

Acceptance and utilization of LTER data requires that:

(1) The Principal Investigator be sent a notice stating reasons for acquiring any data and a description of the publication intentions.
(2) The Principal Investigator of the data set be sent a copy of the report or manuscript prior to submission and be adequately cited in any resultant publications.
(3) A copy of any resultant publications should be sent to:

Principal Investigator
Ecosystems Center
Marine Biological Laboratory
7 MBL St.
Woods Hole, MA 02543

Dataset URLs:METADATA: HTML, Rich Text, XML(EML compliant)
DATA: Comma Delimited, Excel file with Metadata and data
Dataset ID:MON-PR-MBYSI2007.02
Dataset Title:Year 2007, 15 minute interval, water quality measurements of water column temperature, salinity, oxygen, and depth in the upper Parker River Estuary at Middle Road Bridge, Newbury, MA.
Investigator 1: 
First Name:Charles
Last Name:Hopkinson
Address line 1:University of Georgia
Address line 2:229 Marine Sciences
Address line 3:
Zip Code:30602
Associate Investigators:Hap Garritt
Keywords:PIE LTER, primary production, disturbance, temperature, oxygen, conductivity, salinity, depth, saturation, gas, Parker River, monitoring
Abstract:Year 2007, Continuous, 15 minute time interval, water quality measurements of water column temperature, salinity, conductivity, oxygen and depth in the upper Parker River Estuary at Middle Road Bridge, Newbury, MA.
Contact: Plum Island Ecosystems LTER Information Manager
The Ecosystems Center
Marine Biological Lab
7 MBL St
Woods Hole, MA 02543
Phone (508) 289 7485
Online URL:
Data File URL
Data File Name MON-PR-MBYSI2007
Beginning Date 4/9/2007
End Date 12/4/2007
Number of Data Records 22932
Other Files to Reference
Availability Status Type 1
Quality Control Information
Maintenance Description
Log of Changes: Version 01: February 24, 2012, updated data and metadata. Used MarcrosExportEML_HTML (working)pie_excel2007.xlsm 2/9/12 1:33 PM for QA/QC to EML 2.1.0
Version 02: June 29, 2017, updated data and metadata for DEIMS 7 and PASTA.Used MarcrosExportEML_HTML (working)pie_excel2007_Jun2017.xlsm 6/15/17 10:23 AM for QA/QC to EML 2.1.0
Geographic Description YSI water quality sonde at Middle Rd (Thurlow's Bridge) on Parker River, Byfield, MA  
Location Bounding Box    
West Bounding Coordinate    
East Bounding Coordinate    
North Bounding Coordinate    
South Bounding Coordinate    
OR if single point location    
Latitude 42.758904  
Longitude -70.900941  
Taxonomic Protocols
Organisms studied
Methods:Measurements are made using a YSI 6600 water quality sonde with internal datalogging capabilities. YSI Sonde sensors consist of 6562 dissolved oxygen probe (rapid pulse Clark type,polarographic), 6560 conductivity/temperature probe (thermistor), vented level depth sensor (stainless steel strain gauge).

Missing data or blank values are caused by maintenance time periods or where sensor measurements are obviously wrong in the context of what would be expected. For example, the conductivity sensor has a relatively small opening and chamber for the conductivity electrodes, the estuary can have varying suspended sediment/detrital loads moving in the water column which enter the conductivity cell shorting out the electrodes making a faulty conductivity measurement (lower than expected). Oxygen measurements are dependent upon the conductivity measurements so the oxygen also becomes erroneous. Obvious measurements/data errors have been removed from the data set however the user of this data should also conduct their own data analysis to determine if the data are suitable for their particular situation.

Typical sensor/data problems are:
For oxygen: Fouling of Clark style DO probe where membrane gets a brownish bacterial? film affecting DO sensor readings/calibration checks.
For conductivity: Conductivity cell can have detrital material stuck in it, shorting out cell, resulting in lower than expected conductivity.
For depth: Depth strain gage pressure sensor may come out of the water at low tides resulting in many "zero" depth readings or sometimes negative values.

YSI Dissolved oxygen % saturation reporting can vary depending upon how the oxygen is calibrated.
For this data set two Oxygen percent saturation values are reported.
DO%YSI variable name represents a YSI calibration in air, from Standard Methods, refers to calibration at a particular ATM pressure which allows DO% for calibration to fluctuate above/below 100% when ATM is above/below reference 760 or 1 ATM
DO%Local variable name represents an oxygen calibration in air at a particular ATM pressure but it forces the DO% to be 100%, does not allow it to be under or above if ATM is above/below 760.
DO%Local data should be used for metabolism studies when correcting for diffusion based on gradient deviations from 100% which by definition is the % saturation of oxygen in air.
DO%YSI should not be used since it would require a known ATM pressure at each interval to calculate the ATM % saturation of oxygen to be use for that interval, probably a small correction anyway.
Concentration of DO remains the same for either calibration.

Data Table

Variable Name Variable Description Units Measurement Scale Code Information Number Type DateTime Format Missing Value Code Missing Value Code Explanation
Date Date of sampling   datetime     dd-mon-yyyy NA NA = not available
Time Time of sampling (eastern standard time EST), 24 hr   datetime     hh:mm:ss NA NA = not available
Station Name of sampling station   nominal       NA NA = not available
Temp Temperature of water celsius interval   real   NA NA = not available
SpCond Specific conductivity of water millisiemenPerCentimeter ratio   real   NA NA = not available
Cond Conductivity of water millisiemenPerCentimeter ratio   real   NA NA = not available
Salinity Salinity of water partPerThousand interval   real   NA NA = not available
DO%YSI Clark style percent dissolved oxygen saturation of water, YSI calibration varies with ATM pressure percent ratio   real   NA NA = not available
DO%Local Clark style percent dissolved oxygen saturation of water, calibration fixed at 100% in air percent ratio   real   NA NA = not available
DO Conc Dissolved oxygen concentration of water milligramPerLiter ratio   real   NA NA = not available
DO Charge Dissolved oxygen sensor charge dimensionless ratio   real   NA NA = not available
Depth Water column depth above sonde pressure transducer meter ratio   real   NA NA = not available
Comments Comments about specific data   nominal       NA NA = not available