PUBLICATIONS 2007-2008
Balshi, M. S., A. D. McGuire, Q. Zhuang, J. Melillo, D. W. Kicklighter, E. Kasischke, C. Wirth, M. Flannigan, J. Harden, J. S. Clein, T. J. Burnside, J. McAllister, W. A. Kurz, M. Apps, and A. Shvidenko. 2007. The role of historical fire disturbance in the carbon dynamics of the pan-boreal region: A process-based analysis. Journal of Geophysical Research G: Biogeosciences. 112 (G2): Art. No. G02029. 10.1029/2006jg000380.
Biesinger, Z., E. B. Rastetter, and B. Kwiatkowski. 2007. Hourly and daily models of active layer evolution in Arctic soils. Ecological Modelling 206:131-146.
Benstead, J., A. Green, L. A. Deegan, B. J. Peterson, K. Slavik, B. Bowden, and A. Hershey. 2007. Recovery of three Arctic stream reaches from experimental nutrient enrichment. Freshwater Biology 52:1077- 1089 doi:1010.1111/j.1365-2427.2007.01723.
Bernhard, A. E., J. Tucker, A. E. Giblin, and D. A. Stahl. 2007. Functionally different communities of ammonia oxidizing bacteria along an estuarine salinity gradient. Environmental Microbiology 9: 1439-1447.
Bowen, J. L., J. M. Ramstack, S. Mazzilli, and I. Valiela. 2007. NLOAD: An interactive, web-based modeling tool to predict nitrogen loads and concentrations in estuaries, and to explore options for nitrogen management. Ecological Applications 17:S17-S30.
Bowen, J. L., K. D. Kroeger, G. Tomasky, W. J. Pabich, M. L. Cole, R. H. Carmichael, and I. Valiela. 2007. A review of land-estuary coupling by groundwater discharge of nitrogen to New England estuaries: Mechanisms and effects. Applied Geochemistry 22:175-191.
Cardon, Z. G., D. W. Gray, and L. A. Lewis. 2008. The green algal underground – evolutionary secrets of desert cells. BioScience 58(2): 114-122.
Castro, P., I. Valiela, and H. Freitas. 2007. Eutrophication in Portuguese estuaries evidenced by _15N of macrophytes. Marine Ecology Progress Series 351:43-51.
Castro, P., I. Valiela, and H. Freitas. 2007. The use of sedimentary %C, %N, δ15N, and Pb concentrations to assess historical changes in anthropogenic influence on Portuguese estuaries. Environmental Pollution 147:706-712
Cerri, C. E. P., G. Sparovek, M. Bernoux, W. E. Easterling, J. M. Melillo, and C. C. Cerri. 2007. Tropical agriculture and global warming: Impacts and mitigation options. Scientia Agricola 64 (1): 83-99. 10.1590/S0103-90162007000100013.
Chaves, J., C. Neill, S. Germer, S Neto, A. Krusche, and H. Elsenbeer. 2007. Land management impacts on runoff sources in small Amazon watersheds. Hydrological Processes. DOI: 10.1002/hyp.6803
Colinvaux, P. 2008. Amazon Expeditions: My Quest for the Ice-Age Equator. Yale University Press, New Haven and London. 328 pp.
Cornelissen, J. H.C., P. M. van Bodegom, R. Aerts, T. V. Callaghan, R. S. P. van Logtestijn, J. Alatalo, F. S. Chapin, R. Gerdol, J. Gudmundsson, D. Gwynn-Jones, A. E. Hartley, D. S. Hik, A. Hofgaard, I. S. Jónsdóttir, S. Karlsson, J. A. Klein, J. Laundre, B. Magnusson, A. Michelsen, U. Molau, V. G. Onipchenko, H. M. Quested, S. M. Sandvik, I. K. Schmidt, G. R. Shaver, B. Solheim, N. A. Soudzilovskaia, A. Stenström, A. Tolvanen, Ø. Totland, N. Wada, J. M. Welker, X. Zhao, and MOL Team. 2007. Global negative vegetation feedback to climate warming responses of leaf litter decomposition rates in cold biomes. Ecology Letters 10: 619-627.
Crump, B. C., H. E. Adams, J. E. Hobbie, and G. W. Kling. 2007. Biogeography of bacterioplankton in lakes and streams of an Arctic tundra catchment. Ecology 88: 1365-1378.
Culbertson, J. S., I. Valiela, E. E. Peacock, C. M. Reddy, A. Carter and R. VanderKruik. 2007. Long-term biological effects of petroleum residues on fiddler crabs in salt marshes. Marine Pollution Bulletin 54: 955-962.
Culbertson, J.B., Valiela, I., Olsen, Y. S., and C. Reddy. 2007. Effect of field exposure to 38-year-old residual petroleum hydrocarbons on growth, condition index, and filtration rate of the ribbed mussel, Geukensia demissa. Environmental Pollution doi:10.1016/j.envpol.2007.10.008.
Deegan, LA. J. L. Bowen, D. Drake, J. W. Fleeger, C. T. Friedrichs, K. A. Galván, J. E. Hobbie, C. Hopkinson, J. M. Johnson, D. S. Johnson, L. E. Lemay, E. Miller, B. J. Peterson, C. Picard, S. Sheldon, J. Vallino, and R. S. Warren. 2007. Susceptibility of salt marshes to nutrient enrichment and predator removal. Special Issue Nutrient Enrichment of Estuarine and Coastal Marine Environments, M. Kennish, (ed.). Ecological Applications 17(5):S42-S63.
Douma, J.C., M.T. van Wijk, and G.R. Shaver. 2007. The contribution of mosses to the carbon and water exchange of arctic ecosystems: quantification and relationships with system properties. Plant, Cell, and Environment 30: 1205-1215.
Ducklow, H. W. 2007. Southern Ocean: Biogeochemistry, pp. 942-4. In: B. Riffenburgh, (ed.), Encyclopedia of the Antarctic. New York: Routledge. 2 vols. 1146 pp.
Ducklow, H. W. and P. L. Yager. 2007. Pelagic bacterial processes in polynyas, pp. 323-362. In: W. O. Smith and D. Barber (eds.) Polynyas: Windows into Polar Oceans, Elsevier/CRC. New York.
Ducklow, H. W. et al. 2007. Marine ecosystems: The West Antarctic Peninsula. Philosophical Transactions of the Royal Society of London, 362(1477):67-94.
Ducklow, H.W., D. A. Hansell, and J. A. Morgan. 2007. Dissolved organic carbon and nitrogen in the Western Black Sea. Marine Chemistry 105:140-150.
Felzer, B. S., Cronin, T., Reilly, J. M., Melillo, J. M. and Wang, X. 2007. Impacts of ozone on trees and crops. Comptes rendus Geosience, 339/11-12, pp 784-798 (DOI: 10.1016/j.crte.2007.08.008).
Fleeger, J. W., D. S. Johnson, K. A. Galvan, and L. A. Deegan. 2008. Top-down and bottom-up control of infauna varies across the salt marsh landscape. Journal of Experimental Marine Biology and Ecology 357: 20–34.
Galford, G.L., J. F. Mustard, J. M. Melillo, A. Gendrin, C. C. Cerri and C. E. P. Cerri. 2008. Wavelet analysis of MODIS time series to detect expansion and intensification of row-crop agriculture in Brazil. Remote Sensing of Environment: 112(2):576-587.
Geisz, H. N., R. M. Dickhut, M. A. Cochran, W. R. Fraser and H. W. Ducklow. 2008. Melting glaciers: A probable source of DDT to the Antarctic marine ecosystem. Environ. Sci. Technol. 10.1021/es702919n
Germer, S., C. Neill, A. V. Krusche, S. Gouveia Neto and H. Elsenbeer. 2007. Seasonal and within-event dynamics of rainfall and throughfall chemistry in an open tropical rainforest in Rondônia, Brazil. Biogeochemistry 86: 155-174.
Gray, D. W., L. A. Lewis and Z. G. Cardon. 2007. Photosynthetic recovery following dessication of desert green algae (Chlorophyta) and their aquatic relatives. Plant, Cell and the Environment 30: 1240-1255.
Hobbie, J. E., M. Bahr, and A.-L. Reysenbach. 2007. Ecology at Long Term Research Sites: Integrating Microbes and Ecosystems, pp. 182-189. In C. J.Hurst (ed.): Third Edition of the ASM Manual of Environmental Microbiology. ASM Press.
Knapp, A.K., J. M. Briggs, S.L. Collins, S.R. Archer, M.S. Bret-Harte, B.E. Ewers, D.P. Peters, D.R. Young, G.R. Shaver, E.Pendall, and M. B. Cleary. 2008. Shrub encroachment in North American grasslands: shift in growth form dominance rapidly alters control of ecosystem C inputs. Global Change Biology 14(3):615-623.
Lambers, H., J. A. Raven, G. Shaver and S. E. Smith. 2008. Specialised nutrient-acquisition strategies reflect plant adaptations to changing N and P status as soils change over geological time scales. Trends in Ecology and Evolution 23(2): 95-103.
Lau, E., A. Ahmad, P. A. Steudler and C. M. Cavanaugh. 2007. Molecular characterization of methanotrohic communities in forest soils that consume atmospheric methane. FEMS Microbial Ecology 60: 490-500.
McHorney, R. M., and C. Neill. 2007. Alteration of water levels in a Massachusetts coastal plain pond subject to municipal ground water withdrawals. Wetlands 27:366-380.
Mulholland, P. J., A. M. Helton, G.C. Poole, R.O. Hall, Jr., S. K. Hamilton, B. J. Peterson, J.L. Tank, L.R. Ashkenas, L. W. Cooper, C. N. Dahm, W. K. Dodds, S. E. G. Findlay, S. V. Gregory, N.B. Grimm, S. L. Johnson, W.H. McDowell, J. L. Meyer, H. M.Valett, J. R. Webster, C. P. Arango, J. J. Beaulieu, M. J. Bernot, A. J. Burgin, C. L. Crenshaw, L.T. Johnson, B. R. Niederlehner, J. M. O’Brien, J. D. Potter, R.W. Sheibley, D. J. Sobota, and S. M. Thomas. 2008. Stream denitrification across biomes and its response to anthropogenic nitrate loading. Nature 452: 202-205.
Neill, C. 2007. The challenge of managing disturbance regimes, terrestrial communities and rare species in a suburbanizing region: the Northeastern U.S. coastal sandplain. Biological Conservation 136: 1-3.
Neill, C., B. Von Holle, K. Kleese, K. R. Ivy, A. R. Collins, C. Treat and M. Dean. 2007. Historical influences on the vegetation and soils of the Martha’s Vineyard, Massachusetts coastal sandplain: Implications for conservation and restoration. Biological Conservation 136: 17-32.
Neill, C., W. A. Patterson, III and D. W. Crary, Jr. 2007. Responses of soil carbon, nitrogen and cations to the frequency and seasonality of prescribed burning in a Cape Cod oak-pine forest. Forest Ecology and Management 250: 234-243.
Piccolo, M. C. and C. Neill. 2007. Mineralização e nitrificação do nitrogênio do solo sob floresta e pastagem na amazônia brasileira. Pages 581-634 in T Yamada, S. R. Stipp and A. G. C. Vitte (eds), Nitrogênio e enxofre na agricultura Brasileira. International Plant Nutrition Institute, Piracicaba, SP, Brazil.
Pomeroy, L.R. , P.J. leB. Williams, F. Azam, and J.E. Hobbie. 2007. The microbial loop. Special Issue: A Sea of Microbes. Oceanography 20(2): 28-33.
Raymond, P. A., J. W. McClelland, R. M. Holmes, A. V. Zhulidov, K. Mull, B. J. Peterson, R. G. Striegl, G. R. Aiken, and T. Y. Gurtovaya. 2007. Flux and age of dissolved organic carbon exported to the Arctic Ocean: A carbon isotopic study of the five largest arctic rivers. Global Biogeochemical Cycles, 21, GB4011, doi:10.1029/2007GB002934.
Reilly, J., S. Paltsev, B. Felzer, X. Wang, D. Kicklighter, J. Melillo, R. Prinn, M. Sarofim, A. Sokolov, and C. Wang. 2007. Global economic effects of changes in crops, pasture, and forests due to changing climate, carbon dioxide, and ozone. Energy Policy 35: 5370–5383
Shaver, G. R., L.E. Street, E. B. Rastetter, M. T. van Wijk, and M. Williams. 2007. Functional convergence in Regulation of net CO2 flux in heterogeneous tundra landscapes in Alaska and Sweden. Journal of Ecology 95: 802-817.
Stoll, H., P. Ziveri, N. Shimizu, M. Conte and S. Theroux. 2007. Relationship between coccolith Sr/Ca ratios and coccolithophore production and export in the Arabian Sea and Sargasso Sea. Deep-Sea Res. II, 54, 581-600.
Street L. E., G. R. Shaver, M. Williams, and M. T. van Wijk. 2007. What is the relationship between changes in leaf area and changes in photosynthetic CO2 flux in arctic ecosystems? Journal of Ecology 95: 139-150.
Sullivan, P. F., M. Sommerkorn, H. M. Rueth, K. J. Nadelhoffer, G. R. Shaver, and J. M. Welker. 2007. Climate and species affect fine root production with long-term fertilization in acidic tussock tundra near Toolik Lake, Alaska. Oecologia 153: 643-652.
Teichberg, M., L. Heffner, S. E. Fox, and I. Valiela. 2007. Nitrate reductase and glutamine synthetase activity, internal N pools, and growth of Ulva lactuca: Responses to long and short-term N supply. Mar. Biol. 151:1249-1259.
Turich, C. M., K. H. Freeman, M. A. Bruns, M. Conte, A. Jones and S. G. Wakeham. 2007. Lipids of the marine Archea: Patterns and provenance in the water-column and sediments. Geochim. Cosmochim. Acta 71, 3272-3291.
Valiela, I. and P. Martinetto. 2007. Breeding bird abundances in Eastern North America, urban sprawl, and loss of natural habitats: Expanding footprints of the developed world. BioScience 57:360-370.
Valiela, I., and S. E. Fox. Managing Coastal Wetlands. 2008. Science 319: 290-291.
Van Beek, P., R. Francois, M. Conte, J.-L. Reyss, M. Souhant and M. Charette. 2007. 228Ra/226Ra and 226Ra/Ba ratios in seawater and particles at the OFP site in the western Sargasso Sea near Bermuda. Geochim. Cosmochim. Acta. 71, 71-86.
York, J. K., G. Tomasky, I. Valiela, and D. J. Repeta. 2007. Stable isotopic detection of ammonium and nitrate assimilation by phytoplankton in the Waquoit Bay estuarine system. Limnology and Oceanography 52:144-155.
Zhuang, Q., J. M. Melillo, A. D. McGuire, D. W. Kicklighter, R. G. Prinn, P. A. Steudler, B. S. Felzer and S. Hu. 2007. Net land-atmosphere exchanges of CH4 and CO2 in Alaska: implications for the region’s greenhouse gas budget. Ecological Applications 17(1):203-212.
In press:
Battin, T. J., L. Kaplan, S. Findlay, C. Hopkinson, E. Marti, A. Packman, J. D. Newbold, F. Sabater. Biophysical controls on organic carbon fluxes in fluvial networks. Nature Geoscience.
Bowden, W. B., M. Gooseff, J. Bradford, A. Balser, L. Rogan, A. Green, and B.J. Peterson. Potential effects of increased thermokarst activity on ecosystem dynamics in streams draining the foothills of the North Slope, Alaska. Journal of Geophysical Research.
Bowen, J. L., and I. Valiela. Using _15N to assess coupling between watersheds and estuaries in temperate and tropical regions. Journal of Coastal Research.
Bret-Harte, M.S., M.C. Mack, G.R. Goldsmith, D.B. Sloan, J. DeMarco, G.R. Shaver, P. M. Ray, Z. Biesinger, and F. S. Chapin, III. Plant functional types do not predict biomass responses to removal and fertilization in Alaskan tussock tundra. Journal of Ecology.
Cerri, C. E. P., M. Bernoux, V. Chaplot, B. Volkoff, R. L. Victoria, J. M. Melillo, K. Paustian and C. C. Cerri. Nova Vida agronomic experiment: 1. Taking into account the spatial variability of soil properties for selecting the experimental area. Plant and Soil.
Claessens, L., E. Rastetter, C. Hopkinson, J. Vallino, S. Canfield and R. Pontius. Evaluating the effect of historical changes in land use and climate on the waterbudget of the Ipswich River Basin, Massachusetts, USA. Water Resources Research.
Cole, M. L., K. D. Kroeger, J. W. McClelland, and I. Valiela. Effects of watershed land use on nitrogen concentrations and _15N of nitrogen in groundwater. Biogeochemistry.
Culbertson, J. B., I. Valiela, E. E. Peacock, C. M. Reddy, A. Carter, and R. VanderKruik. Long-term biological effects of petroleum: Response of fiddler crabs to oil in salt marsh sediments. Mar. Poll. Bull.
Drake, D. C., L.A. Deegan, L.A. Harris, E.E. Miller, B.J. Peterson, and R.S. Warren. Plant N dynamics in fertilized and natural New England saltmarshes: A paired _15N tracer study. Marine Ecology Progress Series.
Fedorko, E., G. Pontius, S. Aldrich, L. Claessens, C. Hopkinson and W. Wollheim. Spatial distribution of land-type in regression models of pollutant loading. Spatial Hydrology.
Germer, S., C. Neill, A. V. Krusche, S. Gouveia Neto and H. Elsenbeer. Seasonal and within-event dynamics of rainfall and throughfall chemistry in an open tropical rainforest in Rondônia, Brazil. Biogeochemistry.
Grimm, N., D. Foster, P. Groffman, M. Grove, C. Hopkinson, K. Nadelhoffer, D. Pataki and D. Peters. Land change: ecosystem responses to urbanization and pollution across climatic and societal gradients. Frontiers in Ecology and Environment.
Hobbie, J. E. and J. Laybourn-Parry. Heterotrophic microbial processes in polar lakes. In W.F. Vincent and J. Laybourn-Parry (editors). Polar Limnology. Oxford University Press, Oxford.
Hopkinson, C. and A. Giblin. In press. Salt marsh N Cycling. In- R. Capone, D. Bronk, M. Mulholland and E. Carpenter (eds), Nitrogen in the Marine Environment - 2nd Edition. Elsevier Publ.
Hopkinson, C.S., A. E. Lugo, M. Alber, A. Covich and S. van Bloem. Understanding and forecasting the effects of sea level rise and intense windstorms on coastal and upland ecosystems: the need for a continental-scale network of observatories. Frontiers in Ecology and Environment.
Huang, S. and M. Conte. Source/process apportionment of major and trace elements in sinking particles in the Sargasso Sea. Geochim. Cosmochim. Acta
Lyons, M.M., Lau, Y.-T., Carden, W.E., Ward, J.E., Roberts, S.B., Smolowitz, R., Vallino, J., Allam, B. Characteristics of marine aggregates in shallow-water ecosystems: Implications for disease ecology. EcoHealth.
McClelland, J. W, M. Stieglitz, F. Pan, R. M. Holmes, and B. J. Peterson. Recent changes in nitrate and dissolved organic carbon export from the Upper Kuparuk River, North Slope, Alaska. Journal of Geophysical Research.
McNamara, J. P., D. L. Kane, J. E. Hobbie and G. W. Kling. Hydrologic and biogeochemical controls on the spatial and temporal patterns of nitrogen and phosphorus in the Kuparuk River, arctic Alaska. Hyrdological Processes.
Nowinski, N., S. Trumbore, E. Schuur, M. Mack, and G. Shaver. In press. Nutrient addition prompts rapid destabilization of organic matter in an Arctic tundra ecosystem. Ecosystems.
Passianoto, C. C. T. Ahrens, B. J. Feigl, P. A. Steudler, J. B. do Carmo, and J. M. Melillo. Changes in CO2, N2O, and NO emissions in response to conventional tillage and no-tillage management practices in the state of Rondônia, Brazil. Biology and Fertility of Soils.
Tian, H., J. Liu, J. M. Melillo, M. Liu, D. Kicklighter, X. Yan and S. Pan. The terrestrial carbon budget in East Asia: Human and natural impacts. In: C. Fu, J. Freney and J. Steward (eds.), Changes in the Human-Monsoon System of East Asia in the Context of Global Change. SCOPE Series, Island Press, Washington DC.
Valiela, I., and S. Fox. Mechanisms of ecological control over time: Evidence from coastal ecosystems. Valladares, F., Camacho, A., Elosegui, A., Estrada, M., Gracia, C., Senar, J.C. and Gili, J.M. (eds) Unity in Diversity. Ed Rubes, Fundación BBVA, Madrid.
Valiela, I., E. Kinney, J. Culbertson, E. Peacock, and S. Smith. Global losses of mangroves and salt marshes: Magnitudes, causes and consequences. In Duarte, C. (ed.). Global Loss of Coastal Habitats: Magnitudes, Causes, and Consequences. Fundacion BBVA. Madrid.
Van Wijk, M.T., L.E. Street, M. Williams, and G.R. Shaver. Evapotranspiration in the Arctic: determining factors and quantification. Ecosystems.
Vincent, W.F. ,J. E. Hobbie, and J. Laybourn-Parry. Introduction to high latitude limnology. In W.F. Vincent and J. Laybourn-Parry (editors). Polar Limnology. Oxford University Press, Oxford.
Wan, Z., J. J. Vallino, and B. J. Peterson. Study of the inter-annual food web dynamics in the Kuparuk River with a first order approximation inverse model. Ecological Modelling.
White, D., L. Hinzman, L. Alessa, J. Cassano, M. Chambers, K. Falkner, J. Francis, B. Gutowski, M. Holland, M. Holmes, H. Huntington, D. Kane, A. Kliskey, C. Lee, J. McClelland, B. Peterson, F. Staneo, M. Steele, R. Woodgate, D. Yang, K. Yoshikawa, and T. Zhang. The Arctic Freshwater System: Changes and Impacts. Journal of Geophysical Research.
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